Error at Java Program using SWRL + Jess
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Some javascript/style in this post has been disabled (why?)
Hello Martin,
thanks for help.
I'm attaching a zip file with the Java program, the
OWL file, the rules and the output of program execution (reproduced below).
I forgot to say that I have tested with Protege
3.4_beta and 3.4.1 (it works only at IDE). I don't know about support for SWRL
at Protege 4.0 yet.
Thanks,
Ely
set JARS="C:/Program Files/Protege_3.4.1/*";"C:/Program
Files/Protege_3.4.1/plugins/edu.stanford.smi.protegex.owl/*";"C:/Program
Files/Protege_3.4.1/plugins/edu.stanford.smi.protegex.owl.inference.pellet/*";
Protege 3.4.1 Build 537, JVM 1.6.0_10-ea-b07, memory=532M, Windows 2003,
encodin
g=UTF-8, language=pt, country=BR Loaded plugin edu.stanford.smi.protegex.owl - OWL Plugin Loaded plugin ca.uvic.cs.chisel.jambalaya - Jambalaya Loaded plugin dfki.protege.ontoviz Loaded plugin edu.stanford.smi.protegex.rdf_backend - RDF Backend Loaded plugin edu.stanford.smi.protegex.changes - Changes tab Loaded plugin edu.stanford.smi.protegex.standard_extensions - Graph Widget, Tabl e Widget Loaded plugin edu.stanford.smi.protegex.chatPlugin - Chat Loaded plugin edu.stanford.smi.protege.collab - Collaborative Protege Loaded plugin edu.stanford.smi.protege.script - Script Plugin Loaded plugin edu.stanford.smi.protege.stringsearch - String Search Tab Loaded plugin edu.stanford.smi.protegex.datamaster - DataMaster Tab Loaded plugin edu.stanford.smi.protegex.pal_tabs - PAL Tabs Loaded plugin edu.stanford.smi.protegex.ezpal - EZPal Tab Loaded plugin edu.stanford.smi.protegex.facets_tab Loaded plugin edu.stanford.smi.protegex.instance_tree Loaded plugin edu.stanford.smi.protegex.prompt - PROMPT Tab Loaded plugin edu.stanford.smi.protegex.metaanalysis - MetaAnalysis Tab Loaded plugin edu.stanford.smi.protegex.owl.inference.pellet - Protege Pellet Re asoner Loaded plugin edu.stanford.smi.protegex.umls_tab - UMLS Tab Loaded plugin edu.stanford.smi.protegex.wordnet - WordNet Tab Loaded plugin edu.stanford.smi.protegex.xml_tab - XML Tab Loaded plugin org.algernon - Algernon Loaded plugin se.liu.ida.JessTab - JessTab Plugin Loaded plugin uk.ac.iam.soton.akt.tgviztab - TGVizTab Loaded plugin uk.ac.man.cs.mig.coode.debugger Loaded plugin uk.ac.man.cs.mig.coode.manchesterowlsyntaxeditor Loaded plugin uk.ac.man.cs.mig.coode.owldoc Loaded plugin uk.ac.man.cs.mig.coode.owlindividualstab Loaded plugin uk.ac.man.cs.mig.coode.owlviz Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard - Basic Wizards Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard.owl - OWL Wizards Loading triples from: file:/e:/Auckland/cellml2owl/hh_1952/membrane_1.owl Completed triple loading after 250 ms Importing http://celo.mmc.ufjf.br/ontologies/celo.owl from location: http://celo .mmc.ufjf.br/ontologies/celo.owl Loading triples from: http://celo.mmc.ufjf.br/ontologies/celo.owl Completed triple loading after 109 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl from locati on: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\abox .owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl Completed triple loading after 0 ms
Importing http://sqwrl.stanford.edu/ontologies/built-ins/3.4/sqwrl.owl from loca tion: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\sq wrl.owl Loading triples from: http://sqwrl.stanford.edu/ontologies/built-ins/3.4/sqwrl.o wl Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/3.3/swrla.owl from location: C:\Pr ogram Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\swrla.owl Loading triples from: http://swrl.stanford.edu/ontologies/3.3/swrla.owl Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.owl from locat ion: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\swr lm.owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.ow l Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlxml.owl from loc ation: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\S WRLXML.owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlxml. owl Completed triple loading after 16 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal.owl from lo cation: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\ temporal.owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal .owl Completed triple loading after 15 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.owl from locat ion: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\swr lx.owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.ow l Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl from locati on: C:\Program Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\tbox .owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl Completed triple loading after 16 ms
Postprocess: Process entities with incorrect Java type (12 entities) ... 0 ms Postprocess: Process metaclasses (3 metaclasses) ... 0 ms Postprocess: Process subclasses of rdf:List (1 classes) ... 0 ms Postprocess: Instances with multiple types (72 instances) ... 0 ms Postprocess: Add inferred superclasses ... 47 ms Postprocess: Process orphan classes (95 classes) ... 15 ms Postprocess: Generalized Concept Inclusion (0 axioms) ... 0 ms Postprocess: Abstract classes... 0 ms Postprocess: Domain and range of properties... 16 ms Postprocess: Possibly typed entities (1 resources) ... 0 ms Updating underlying frames model in 0 ms Loading triples from: file:/E:/Auckland/ontologies/celo_rules.owl Completed triple loading after 46 ms Importing http://celo.mmc.ufjf.br/ontologies/celo.owl from location: http://celo .mmc.ufjf.br/ontologies/celo.owl Loading triples from: http://celo.mmc.ufjf.br/ontologies/celo.owl Completed triple loading after 1125 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl from locati on: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\abox.ow l Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl Completed triple loading after 0 ms
Importing http://sqwrl.stanford.edu/ontologies/built-ins/3.4/sqwrl.owl from loca tion: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\sqwrl .owl Loading triples from: http://sqwrl.stanford.edu/ontologies/built-ins/3.4/sqwrl.o wl Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.owl from locat ion: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\swrlm. owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.ow l Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlxml.owl from loc ation: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\SWRL XML.owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlxml. owl Completed triple loading after 15 ms Importing http://swrl.stanford.edu/ontologies/3.3/swrla.owl from location: C:\Pr ogram Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\swrla.owl Loading triples from: http://swrl.stanford.edu/ontologies/3.3/swrla.owl Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal.owl from lo cation: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\tem poral.owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal .owl Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.owl from locat ion: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\swrlx. owl Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.ow l Completed triple loading after 0 ms Importing http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl from locati on: C:\Program Files\Protege_3.4.1\plugins\edu.stanford.smi.protegex.owl\tbox.ow l Loading triples from: http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl Completed triple loading after 16 ms
Postprocess: Process entities with incorrect Java type (4 entities) ... 0 ms Postprocess: Process metaclasses (3 metaclasses) ... 0 ms Postprocess: Process subclasses of rdf:List (1 classes) ... 0 ms Postprocess: Instances with multiple types (91 instances) ... 16 ms Postprocess: Add inferred superclasses ... 0 ms Postprocess: Process orphan classes (121 classes) ... 0 ms Postprocess: Generalized Concept Inclusion (0 axioms) ... 0 ms Postprocess: Abstract classes... 0 ms Postprocess: Domain and range of properties... 0 ms Postprocess: Possibly typed entities (1 resources) ... 0 ms Updating underlying frames model in 0 ms Rule engine 'SWRLJessBridge' registered with the SWRLTab bridge. edu.stanford.smi.protegex.owl.swrl.bridge.jess.exceptions.SWRLJessBridgeExceptio n: Jess reported an error in routine invokeSWRLBuiltIn while executing (invokeSWRLBuiltIn "Def-hasBiologicalVariable" "http://w ww.w3.org/2003/11/swrlb#stringEqualIgnoreCase" 0 false ?x2 ?x4) while executing rule LHS (Node2) while executing rule LHS (Node2) while executing rule LHS (Node2) while executing rule LHS (Node2) while executing rule LHS (MTELN) while executing rule LHS (TECT) while executing (assert (MAIN::http://celo.mmc.ufjf.br/ontologies/celo.o wl#hasDetail http://celo.mmc.ufjf.br/owl/hh_1952/membrane#membrane_i_K "-")). Message: Error during execution. Program text: ( assert ( http://celo.mmc.ufjf.br/ontologies/celo.owl#hasDetail http://celo.mmc.ufjf.br/owl/hh_1952/membrane#membrane_i_K "-" ) ) at line 1. at edu.stanford.smi.protegex.owl.swrl.bridge.jess.SWRLJessBridge.execute Commands(Unknown Source) at edu.stanford.smi.protegex.owl.swrl.bridge.jess.SWRLJessBridge.defineA xiom(Unknown Source) at edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine Bridge.exportAxioms(Unknown Source) at edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine Bridge.exportSWRLRulesAndOWLKnowledge(Unknown Source) at edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine Bridge.importSWRLRulesAndOWLKnowledge(Unknown Source) at edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine Bridge.infer(Unknown Source) at edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine Bridge.infer(Unknown Source) at br.ufjf.mmc.celo.editor.OWLRules.execute(OWLRules.java:101) at br.ufjf.mmc.celo.editor.OWLRules.main(OWLRules.java:43)
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swrl.zip (12K) |
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